Variant report

Variant	rs10189544
Chromosome Location	chr2:116314604-116314605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1026097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1154727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11694627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12373737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13001120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1448460	0.82[AFR][1000 genomes]
rs1550987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1584402	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712001	0.82[AFR][1000 genomes]
rs1839134	0.82[AFR][1000 genomes]
rs1900747	0.82[AFR][1000 genomes]
rs4849405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59033152	1.00[AMR][1000 genomes]
rs72945935	1.00[AMR][1000 genomes]
rs72945949	1.00[AMR][1000 genomes]
rs72945973	1.00[AMR][1000 genomes]
rs72945985	1.00[AMR][1000 genomes]
rs72945987	1.00[AMR][1000 genomes]
rs72947986	1.00[AMR][1000 genomes]
rs72947993	1.00[AMR][1000 genomes]
rs72947996	1.00[AMR][1000 genomes]
rs72961549	1.00[AMR][1000 genomes]
rs843431	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116301400-116315800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116312000-116315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:116314400-116314800	Enhancers	Fetal Lung	lung
4	chr2:116314400-116315800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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