Variant report

Variant	rs72954024
Chromosome Location	chr2:113608904-113608905
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10176689	1.00[EUR][1000 genomes]
rs10181385	1.00[EUR][1000 genomes]
rs10183049	1.00[EUR][1000 genomes]
rs1143626	1.00[EUR][1000 genomes]
rs1143641	1.00[EUR][1000 genomes]
rs13424846	1.00[EUR][1000 genomes]
rs2063918	1.00[EUR][1000 genomes]
rs4849116	1.00[EUR][1000 genomes]
rs60696592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61134068	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61677777	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950353	1.00[AMR][1000 genomes]
rs72950372	1.00[EUR][1000 genomes]
rs72954033	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954034	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954038	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7591401	1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113605600-113610000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:113605800-113610000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:113607200-113611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:113607400-113609000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:113607400-113609000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:113607400-113609400	Weak transcription	K562	blood
7	chr2:113607600-113609600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:113607800-113609800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:113608000-113609000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr2:113608000-113609600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:113608200-113610200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:113608600-113609200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:113608800-113609400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:113608800-113609600	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links