Variant report

Variant	rs72973961
Chromosome Location	chr2:209407443-209407444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:209329724..209332689-chr2:209407248..209409868,2	K562	blood:
2	chr2:209405990..209410694-chr2:209410728..209415214,7	K562	blood:
3	chr2:209406410..209410199-chr2:209429309..209432294,3	K562	blood:
4	chr2:209405403..209410609-chr2:209410620..209413858,6	K562	blood:
5	chr2:209405882..209408450-chr2:209420370..209423296,2	K562	blood:
6	chr2:209403578..209406285-chr2:209407356..209409474,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTH2R-1	chr2:209407385-209407716	NONHSAT076645
2	lnc-PTH2R-1	chr2:209407385-209407716	NONHSAT076646
3	lnc-PTH2R-1	chr2:209407385-209407716	NONHSAT076647

No data

Variant related genes	Relation type
ENSG00000227430	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10210510	1.00[EUR][1000 genomes]
rs13385546	1.00[EUR][1000 genomes]
rs55737358	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56111565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56300252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56300384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57264535	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58006792	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58135941	1.00[EUR][1000 genomes]
rs60436815	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60549156	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61094477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973963	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72973965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981006	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981007	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981017	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981019	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981020	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981023	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981024	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981036	1.00[EUR][1000 genomes]
rs72981039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72985935	1.00[ASN][1000 genomes]
rs73986605	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73986606	0.83[EUR][1000 genomes]
rs73986607	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73986608	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73986609	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986610	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986612	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986613	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986614	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986615	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986617	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986618	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986619	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986621	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73986622	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73987517	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73987539	1.00[ASN][1000 genomes]
rs9288395	1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209405800-209409000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:209406000-209408200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:209406000-209410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:209406400-209407800	Enhancers	Stomach Mucosa	stomach
5	chr2:209406400-209407800	Flanking Active TSS	K562	blood
6	chr2:209407400-209407600	Active TSS	Fetal Kidney	kidney
7	chr2:209407400-209407800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:209407400-209408000	Enhancers	Primary hematopoietic stem cells	blood

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