Variant report
| Variant | rs73987539 |
|---|---|
| Chromosome Location | chr2:209454467-209454468 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209453371..209455588-chr2:209458893..209461604,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs55974317 | 0.96[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs56111565 | 1.00[ASN][1000 genomes] |
| rs56199915 | 0.96[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs56300252 | 1.00[ASN][1000 genomes] |
| rs56300384 | 1.00[ASN][1000 genomes] |
| rs56325500 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs58006792 | 1.00[ASN][1000 genomes] |
| rs60549156 | 1.00[ASN][1000 genomes] |
| rs61094477 | 1.00[ASN][1000 genomes] |
| rs6742499 | 1.00[ASN][1000 genomes] |
| rs72973961 | 1.00[ASN][1000 genomes] |
| rs72973963 | 1.00[ASN][1000 genomes] |
| rs72973965 | 1.00[ASN][1000 genomes] |
| rs72979102 | 1.00[ASN][1000 genomes] |
| rs72981004 | 1.00[ASN][1000 genomes] |
| rs72981006 | 1.00[ASN][1000 genomes] |
| rs72981007 | 1.00[ASN][1000 genomes] |
| rs72981017 | 1.00[ASN][1000 genomes] |
| rs72981019 | 1.00[ASN][1000 genomes] |
| rs72981020 | 1.00[ASN][1000 genomes] |
| rs72981023 | 1.00[ASN][1000 genomes] |
| rs72981024 | 1.00[ASN][1000 genomes] |
| rs72981032 | 1.00[ASN][1000 genomes] |
| rs72981033 | 1.00[ASN][1000 genomes] |
| rs72981039 | 1.00[ASN][1000 genomes] |
| rs72981041 | 1.00[ASN][1000 genomes] |
| rs72981042 | 1.00[ASN][1000 genomes] |
| rs72981043 | 1.00[ASN][1000 genomes] |
| rs72985935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72985936 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72985938 | 0.96[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72985950 | 0.96[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73987517 | 1.00[ASN][1000 genomes] |
| rs73987541 | 0.93[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9288395 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209438800-209459400 | Weak transcription | K562 | blood |
| 2 | chr2:209449400-209458800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
