Variant report

Variant	rs72993988
Chromosome Location	chr6:133659514-133659515
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1336530	0.91[EUR][1000 genomes]
rs2094198	1.00[EUR][1000 genomes]
rs56043945	0.86[EUR][1000 genomes]
rs58715540	0.91[EUR][1000 genomes]
rs714176	0.86[EUR][1000 genomes]
rs714177	0.86[EUR][1000 genomes]
rs72993941	1.00[EUR][1000 genomes]
rs72995906	0.80[EUR][1000 genomes]
rs72995908	0.91[EUR][1000 genomes]
rs72995914	0.91[EUR][1000 genomes]
rs72996001	0.91[EUR][1000 genomes]
rs72997742	0.86[EUR][1000 genomes]
rs742297	0.86[EUR][1000 genomes]
rs742298	0.86[EUR][1000 genomes]
rs7749769	0.91[EUR][1000 genomes]
rs7749773	0.91[EUR][1000 genomes]
rs7762780	0.81[EUR][1000 genomes]
rs7765967	0.86[EUR][1000 genomes]
rs7766140	0.86[EUR][1000 genomes]
rs9373049	0.91[EUR][1000 genomes]
rs9373050	0.87[EUR][1000 genomes]
rs9375960	0.86[EUR][1000 genomes]
rs9389068	0.91[EUR][1000 genomes]
rs9389069	0.91[EUR][1000 genomes]
rs9389072	0.91[EUR][1000 genomes]
rs9389073	0.91[EUR][1000 genomes]
rs9389075	0.91[EUR][1000 genomes]
rs9389076	0.86[EUR][1000 genomes]
rs9402507	0.86[EUR][1000 genomes]
rs9402509	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
4	chr6:133657400-133660800	Enhancers	Hela-S3	cervix
5	chr6:133658400-133662800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:133658600-133660000	Weak transcription	A549	lung
7	chr6:133659000-133661200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:133659000-133661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133659000-133663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:133659200-133660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:133659200-133660800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133659200-133660800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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