Variant report

Variant	rs742297
Chromosome Location	chr6:133689800-133689801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133283967..133284875-chr6:133689207..133690459,3	MCF-7	breast:
2	chr6:133607841..133608895-chr6:133689474..133690346,4	MCF-7	breast:
3	chr6:133561688..133562414-chr6:133689463..133690265,2	MCF-7	breast:
4	chr6:133512728..133513279-chr6:133689484..133690000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112319	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1336530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1926092	0.90[JPT][hapmap]
rs2094198	0.86[EUR][1000 genomes]
rs56043945	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58715540	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs714176	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993941	0.86[EUR][1000 genomes]
rs72993988	0.86[EUR][1000 genomes]
rs72995906	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72995908	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72995914	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72996001	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72997742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749769	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749773	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762780	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs7765967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373049	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385645	0.93[ASW][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs9389068	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9389069	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9389072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9389073	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9389075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133674000-133689800	Weak transcription	A549	lung
2	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133687600-133690800	Enhancers	Hela-S3	cervix
4	chr6:133687800-133690400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:133688400-133691000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133688600-133691000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133689600-133689800	Weak transcription	Left Ventricle	heart
8	chr6:133689600-133690200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:133689600-133690400	Enhancers	Fetal Lung	lung
10	chr6:133689600-133691200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:133689800-133690000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:133689800-133690000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:133689800-133690000	Enhancers	Left Ventricle	heart
14	chr6:133689800-133691400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links