Variant report

Variant	rs9385645
Chromosome Location	chr6:133694314-133694315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1886982	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs211605	0.85[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs211607	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs211608	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs211627	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs714177	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs714178	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742297	0.93[ASW][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs742298	0.87[AFR][1000 genomes]
rs9373048	0.80[CEU][hapmap]
rs9373051	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375958	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389070	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389071	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399061	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399062	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9483577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451050	chr6:133692259-133695857	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133691400-133698000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133691400-133700200	Weak transcription	Psoas Muscle	Psoas
4	chr6:133691400-133700800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133691600-133701200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133693200-133695000	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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