Variant report

Variant	rs72996001
Chromosome Location	chr6:133679917-133679918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:133679779-133679938	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
EYA4	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1336530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2094198	0.91[EUR][1000 genomes]
rs56043945	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58715540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714176	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs714177	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72993941	0.91[EUR][1000 genomes]
rs72993988	0.91[EUR][1000 genomes]
rs72995906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72995908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72995914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72997742	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742297	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742298	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7749769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765967	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766140	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373049	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375960	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389076	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402507	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402509	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133673600-133687600	Weak transcription	Hela-S3	cervix
2	chr6:133674000-133689800	Weak transcription	A549	lung
3	chr6:133678600-133680600	Enhancers	Fetal Kidney	kidney
4	chr6:133678800-133681000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:133679000-133687400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133679400-133680000	Weak transcription	Psoas Muscle	Psoas
7	chr6:133679400-133682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:133679800-133681000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links