Variant report

Variant	rs72998970
Chromosome Location	chr6:150724591-150724592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150723506..150725309-chr6:150728737..150730322,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12201055	0.83[ASN][1000 genomes]
rs12214529	0.96[ASN][1000 genomes]
rs58987147	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925386	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72998964	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72998974	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72998993	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9478731	0.92[ASN][1000 genomes]
rs9478732	0.92[ASN][1000 genomes]
rs9480384	0.82[ASN][1000 genomes]
rs9480387	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150721800-150729800	Weak transcription	Liver	Liver
2	chr6:150723800-150725400	Enhancers	Fetal Heart	heart
3	chr6:150724000-150725400	Enhancers	Adipose Nuclei	Adipose
4	chr6:150724000-150725400	Enhancers	Fetal Lung	lung
5	chr6:150724000-150725400	Enhancers	Fetal Stomach	stomach
6	chr6:150724000-150725600	Enhancers	Osteobl	bone
7	chr6:150724200-150725400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:150724200-150725400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:150724200-150725600	Enhancers	Hela-S3	cervix
10	chr6:150724200-150725600	Enhancers	NH-A	brain
11	chr6:150724400-150724600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:150724400-150724800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150724400-150724800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:150724400-150724800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150724400-150724800	Enhancers	Fetal Thymus	thymus
16	chr6:150724400-150724800	Enhancers	Left Ventricle	heart
17	chr6:150724400-150724800	Enhancers	Lung	lung
18	chr6:150724400-150724800	Enhancers	Right Atrium	heart
19	chr6:150724400-150724800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:150724400-150724800	Flanking Active TSS	Stomach Mucosa	stomach
21	chr6:150724400-150725000	Enhancers	Aorta	Aorta
22	chr6:150724400-150725000	Enhancers	HMEC	breast
23	chr6:150724400-150725400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:150724400-150725400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:150724400-150725400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:150724400-150725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:150724400-150725400	Enhancers	Esophagus	oesophagus
28	chr6:150724400-150725400	Enhancers	Fetal Muscle Leg	muscle
29	chr6:150724400-150725400	Enhancers	Right Ventricle	heart
30	chr6:150724400-150725400	Bivalent Enhancer	HUVEC	blood vessel
31	chr6:150724400-150725400	Enhancers	NHEK	skin
32	chr6:150724400-150725600	Enhancers	Fetal Kidney	kidney

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