Variant report

Variant	rs9480387
Chromosome Location	chr6:150732960-150732961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12214529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs58987147	0.88[ASN][1000 genomes]
rs6925386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6933986	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72998964	0.88[ASN][1000 genomes]
rs72998970	0.92[ASN][1000 genomes]
rs72998974	1.00[ASN][1000 genomes]
rs72998993	1.00[ASN][1000 genomes]
rs9478731	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480384	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
2	chr6:150727600-150734000	Enhancers	Osteobl	bone
3	chr6:150730400-150733000	Enhancers	HSMMtube	muscle
4	chr6:150730600-150733600	Enhancers	NH-A	brain
5	chr6:150731000-150735200	Weak transcription	NHEK	skin
6	chr6:150731000-150739000	Weak transcription	Hela-S3	cervix
7	chr6:150731200-150733600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
9	chr6:150731400-150733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150731400-150734800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:150731800-150733800	Weak transcription	Brain Germinal Matrix	brain
12	chr6:150731800-150734600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:150732200-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150732400-150734800	Weak transcription	Fetal Stomach	stomach
16	chr6:150732800-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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