Variant report

Variant	rs72998993
Chromosome Location	chr6:150730098-150730099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150727670..150730575-chr6:150733392..150736317,2	K562	blood:
2	chr6:150723506..150725309-chr6:150728737..150730322,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12214529	0.88[ASN][1000 genomes]
rs58987147	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6925386	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6933986	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72998964	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72998970	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72998974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478731	1.00[ASN][1000 genomes]
rs9478732	1.00[ASN][1000 genomes]
rs9480384	0.89[ASN][1000 genomes]
rs9480387	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150724800-150731000	Weak transcription	Lung	lung
2	chr6:150725400-150730200	Weak transcription	Fetal Heart	heart
3	chr6:150725400-150730400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:150725400-150731000	Weak transcription	Right Ventricle	heart
5	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
6	chr6:150725600-150730200	Weak transcription	Fetal Kidney	kidney
7	chr6:150725600-150730400	Weak transcription	Hela-S3	cervix
8	chr6:150725600-150730600	Weak transcription	NH-A	brain
9	chr6:150725600-150731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:150727600-150734000	Enhancers	Osteobl	bone
11	chr6:150728400-150730400	Weak transcription	Spleen	Spleen
12	chr6:150728400-150732400	Enhancers	Fetal Lung	lung
13	chr6:150728600-150730400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:150728800-150732000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:150729200-150730200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:150729600-150731200	Enhancers	Esophagus	oesophagus
17	chr6:150729800-150731000	Enhancers	NHEK	skin
18	chr6:150729800-150732200	Enhancers	Liver	Liver
19	chr6:150730000-150730200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:150730000-150730200	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr6:150730000-150730600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:150730000-150730800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:150730000-150731200	Enhancers	Gastric	stomach
24	chr6:150730000-150731400	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:150730000-150731400	Enhancers	Left Ventricle	heart
26	chr6:150730000-150731400	Enhancers	Pancreas	Pancrea
27	chr6:150730000-150731400	Enhancers	HMEC	breast
28	chr6:150730000-150732200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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