Variant report

Variant	rs73014642
Chromosome Location	chr1:165729019-165729020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165726972..165729687-chr1:165736791..165740987,3	MCF-7	breast:
2	chr1:165664693..165666961-chr1:165728750..165730425,2	K562	blood:
3	chr1:165728711..165730386-chr1:165795999..165798728,2	K562	blood:
4	chr1:165727144..165731091-chr1:165796084..165798255,3	K562	blood:
5	chr1:165727367..165730301-chr1:165730558..165733503,2	MCF-7	breast:
6	chr1:165720854..165729861-chr1:165736355..165740477,8	K562	blood:

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs55703820	0.90[AFR][1000 genomes]
rs55763123	0.90[AFR][1000 genomes]
rs55767704	0.86[AFR][1000 genomes]
rs55785560	0.90[AFR][1000 genomes]
rs55869604	1.00[AFR][1000 genomes]
rs56113452	0.80[AFR][1000 genomes]
rs56126827	1.00[AFR][1000 genomes]
rs56160106	0.90[AFR][1000 genomes]
rs56207262	1.00[AFR][1000 genomes]
rs56317347	0.90[AFR][1000 genomes]
rs56793439	0.90[AFR][1000 genomes]
rs57135493	0.90[AFR][1000 genomes]
rs57611554	0.90[AFR][1000 genomes]
rs57979453	0.90[AFR][1000 genomes]
rs58307614	0.90[AFR][1000 genomes]
rs58503878	0.90[AFR][1000 genomes]
rs58638396	0.90[AFR][1000 genomes]
rs58666827	0.90[AFR][1000 genomes]
rs58892651	0.90[AFR][1000 genomes]
rs58958766	1.00[AFR][1000 genomes]
rs59221529	1.00[AFR][1000 genomes]
rs59679171	1.00[AFR][1000 genomes]
rs59859859	0.90[AFR][1000 genomes]
rs60019343	0.90[AFR][1000 genomes]
rs60116921	0.90[AFR][1000 genomes]
rs60367670	0.90[AFR][1000 genomes]
rs60421446	1.00[AFR][1000 genomes]
rs60720624	0.90[AFR][1000 genomes]
rs60728589	0.90[AFR][1000 genomes]
rs61131936	1.00[AFR][1000 genomes]
rs61190462	1.00[AFR][1000 genomes]
rs61621288	0.90[AFR][1000 genomes]
rs73014620	1.00[AFR][1000 genomes]
rs73014623	0.90[AFR][1000 genomes]
rs73014625	1.00[AFR][1000 genomes]
rs73014627	1.00[AFR][1000 genomes]
rs73014628	1.00[AFR][1000 genomes]
rs73014631	1.00[AFR][1000 genomes]
rs73014633	1.00[AFR][1000 genomes]
rs73014634	1.00[AFR][1000 genomes]
rs73014636	1.00[AFR][1000 genomes]
rs73014644	1.00[AFR][1000 genomes]
rs73014656	0.90[AFR][1000 genomes]
rs73014658	0.90[AFR][1000 genomes]
rs73018602	0.90[AFR][1000 genomes]
rs73020504	0.90[AFR][1000 genomes]
rs73020507	0.90[AFR][1000 genomes]
rs73020508	0.90[AFR][1000 genomes]
rs73020510	0.90[AFR][1000 genomes]
rs73020512	0.90[AFR][1000 genomes]
rs73020513	0.90[AFR][1000 genomes]
rs73020514	0.90[AFR][1000 genomes]
rs73020516	0.90[AFR][1000 genomes]
rs73020519	0.80[AFR][1000 genomes]
rs73020525	0.90[AFR][1000 genomes]
rs73020527	0.90[AFR][1000 genomes]
rs73020529	0.90[AFR][1000 genomes]
rs73020530	0.90[AFR][1000 genomes]
rs73020532	0.90[AFR][1000 genomes]
rs73020541	0.90[AFR][1000 genomes]
rs73020543	0.90[AFR][1000 genomes]
rs73020550	0.90[AFR][1000 genomes]
rs73020551	0.90[AFR][1000 genomes]
rs73020554	0.90[AFR][1000 genomes]
rs73022512	0.90[AFR][1000 genomes]
rs73022513	0.90[AFR][1000 genomes]
rs73022516	0.90[AFR][1000 genomes]
rs73022517	0.90[AFR][1000 genomes]
rs73022519	0.90[AFR][1000 genomes]
rs73022524	0.90[AFR][1000 genomes]
rs73022525	0.90[AFR][1000 genomes]
rs73022526	0.90[AFR][1000 genomes]
rs73022529	0.90[AFR][1000 genomes]
rs73022530	0.90[AFR][1000 genomes]
rs73022535	0.90[AFR][1000 genomes]
rs73022537	0.90[AFR][1000 genomes]
rs73022540	0.90[AFR][1000 genomes]
rs73022541	0.90[AFR][1000 genomes]
rs73022543	0.90[AFR][1000 genomes]
rs73022544	0.90[AFR][1000 genomes]
rs73022547	0.90[AFR][1000 genomes]
rs73022548	0.90[AFR][1000 genomes]
rs73022550	0.90[AFR][1000 genomes]
rs73022551	0.82[AFR][1000 genomes]
rs73022552	0.90[AFR][1000 genomes]
rs73022554	0.90[AFR][1000 genomes]
rs73022555	0.90[AFR][1000 genomes]
rs73022557	0.90[AFR][1000 genomes]
rs73022559	1.00[AFR][1000 genomes]
rs73022561	1.00[AFR][1000 genomes]
rs73022562	1.00[AFR][1000 genomes]
rs73022565	1.00[AFR][1000 genomes]
rs73022566	1.00[AFR][1000 genomes]
rs74121417	0.90[AFR][1000 genomes]
rs74121428	0.90[AFR][1000 genomes]
rs74121432	0.90[AFR][1000 genomes]
rs74121442	0.90[AFR][1000 genomes]
rs74121472	0.90[AFR][1000 genomes]
rs74121477	1.00[AFR][1000 genomes]
rs74121484	1.00[AFR][1000 genomes]
rs74121488	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv518886	chr1:165714187-165741646	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165687600-165737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165694600-165736800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:165711200-165736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:165712200-165737000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:165712600-165737000	Weak transcription	Colonic Mucosa	Colon
6	chr1:165713400-165733600	Weak transcription	NHEK	skin
7	chr1:165713600-165737000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:165720800-165733400	Weak transcription	A549	lung
9	chr1:165721800-165729200	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr1:165721800-165730800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:165721800-165731000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:165721800-165731200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:165721800-165732600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:165721800-165732600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr1:165721800-165732600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:165721800-165732800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:165721800-165732800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:165721800-165734800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:165721800-165734800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:165721800-165734800	Weak transcription	Esophagus	oesophagus
21	chr1:165721800-165735200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:165721800-165736600	Weak transcription	Stomach Mucosa	stomach
23	chr1:165721800-165737000	Weak transcription	Fetal Brain Male	brain
24	chr1:165721800-165737000	Weak transcription	Fetal Heart	heart
25	chr1:165721800-165737000	Weak transcription	Right Atrium	heart
26	chr1:165721800-165737200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:165721800-165737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:165722400-165732800	Weak transcription	HepG2	liver
29	chr1:165722400-165735000	Weak transcription	HSMMtube	muscle
30	chr1:165722600-165733400	Weak transcription	Brain Anterior Caudate	brain
31	chr1:165722600-165733600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:165722600-165736800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:165722800-165729200	Strong transcription	Fetal Kidney	kidney
34	chr1:165722800-165734800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:165723000-165729400	Weak transcription	Thymus	Thymus
36	chr1:165723000-165730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:165723000-165730400	Weak transcription	Gastric	stomach
38	chr1:165723000-165730600	Weak transcription	Lung	lung
39	chr1:165723000-165736800	Weak transcription	Spleen	Spleen
40	chr1:165723200-165732800	Weak transcription	Pancreas	Pancrea
41	chr1:165723200-165736800	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:165723400-165729600	Weak transcription	Fetal Brain Female	brain
43	chr1:165723400-165734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:165723600-165732600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:165723600-165732800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:165723600-165733600	Weak transcription	Brain Angular Gyrus	brain
47	chr1:165723600-165735600	Weak transcription	Brain Germinal Matrix	brain
48	chr1:165723800-165733400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:165723800-165733800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:165724000-165733800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links