The 2.0 version of rSNPBase

Variant report

Variant rs73018602
Chromosome Location chr1:165696379-165696380
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165685200-165696600 Weak transcription Fetal Adrenal Gland Adrenal Gland
2 chr1:165685200-165721600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr1:165685600-165705200 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:165687600-165696800 Weak transcription GM12878-XiMat blood
5 chr1:165687600-165705000 Weak transcription Thymus Thymus
6 chr1:165687600-165706000 Weak transcription HepG2 liver
7 chr1:165687600-165709800 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr1:165687600-165709800 Weak transcription HUVEC blood vessel
9 chr1:165687600-165737600 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:165687800-165707000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:165687800-165709800 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:165689200-165696400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:165689200-165696400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:165690200-165710800 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:165691000-165710000 Weak transcription Fetal Kidney kidney
16 chr1:165692200-165697000 Weak transcription Lung lung
17 chr1:165692600-165697200 Weak transcription Fetal Intestine Small intestine
18 chr1:165693200-165705600 Weak transcription Ovary ovary
19 chr1:165693400-165709600 Weak transcription Colon Smooth Muscle Colon
20 chr1:165693800-165697600 Weak transcription Stomach Mucosa stomach
21 chr1:165693800-165701000 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr1:165693800-165706000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:165694000-165706000 Weak transcription Rectal Smooth Muscle rectum
24 chr1:165694000-165708600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:165694000-165709800 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:165694000-165709800 Weak transcription Brain Substantia Nigra brain
27 chr1:165694000-165711800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:165694200-165696400 Weak transcription Brain Germinal Matrix brain
29 chr1:165694200-165696800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:165694200-165705000 Weak transcription Left Ventricle heart
31 chr1:165694200-165709800 Weak transcription Colonic Mucosa Colon
32 chr1:165694200-165709800 Weak transcription Pancreas Pancrea
33 chr1:165694200-165709800 Weak transcription Spleen Spleen
34 chr1:165694200-165710000 Weak transcription NHEK skin
35 chr1:165694200-165721600 Weak transcription Aorta Aorta
36 chr1:165694200-165721600 Weak transcription Esophagus oesophagus
37 chr1:165694400-165696800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr1:165694400-165697400 Strong transcription Stomach Smooth Muscle stomach
39 chr1:165694400-165698000 Strong transcription Placenta Placenta
40 chr1:165694400-165699200 Strong transcription Liver Liver
41 chr1:165694400-165705800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:165694400-165721600 Strong transcription Primary T helper cells fromperipheralblood blood
43 chr1:165694600-165697400 Strong transcription Skeletal Muscle Female skeletal muscle
44 chr1:165694600-165697400 Strong transcription NH-A brain
45 chr1:165694600-165697600 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:165694600-165698000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:165694600-165699800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:165694600-165701600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:165694600-165709800 Weak transcription Placenta Amnion Placenta Amnion
50 chr1:165694600-165711000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015