Variant report

Variant	rs73043179
Chromosome Location	chr3:180071210-180071211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1497892	0.83[AMR][1000 genomes]
rs1497893	0.83[AMR][1000 genomes]
rs1520616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1607767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831534	0.83[AMR][1000 genomes]
rs16831600	0.83[AMR][1000 genomes]
rs16831605	0.83[AMR][1000 genomes]
rs16831609	0.83[AMR][1000 genomes]
rs16831612	0.83[AMR][1000 genomes]
rs16831616	0.83[AMR][1000 genomes]
rs16831618	0.83[AMR][1000 genomes]
rs2878952	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41324548	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56939966	0.83[AMR][1000 genomes]
rs73033570	0.85[AMR][1000 genomes]
rs73033579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035612	0.83[AMR][1000 genomes]
rs73041700	0.83[AMR][1000 genomes]
rs73043710	0.83[AMR][1000 genomes]
rs73043715	0.83[AMR][1000 genomes]
rs73043718	0.83[AMR][1000 genomes]
rs73043790	0.83[AMR][1000 genomes]
rs73043794	0.83[AMR][1000 genomes]
rs73043796	0.83[AMR][1000 genomes]
rs73044349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044398	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044400	0.85[AMR][1000 genomes]
rs7629836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682924	0.83[AMR][1000 genomes]
rs9882220	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv461027	chr3:180067592-180071986	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	nsv592651	chr3:180067592-180071986	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180064800-180075800	Weak transcription	HMEC	breast
2	chr3:180065400-180075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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