Variant report

Variant	rs16831534
Chromosome Location	chr3:180132540-180132541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1391318	0.86[AFR][1000 genomes]
rs1497892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497894	0.86[AFR][1000 genomes]
rs1520616	0.83[AMR][1000 genomes]
rs1607767	0.83[AMR][1000 genomes]
rs16831600	1.00[AMR][1000 genomes]
rs16831605	1.00[AMR][1000 genomes]
rs16831609	1.00[AMR][1000 genomes]
rs16831612	1.00[AMR][1000 genomes]
rs16831616	1.00[AMR][1000 genomes]
rs16831618	1.00[AMR][1000 genomes]
rs16831627	0.86[AFR][1000 genomes]
rs16831689	0.86[AFR][1000 genomes]
rs2878952	0.83[AMR][1000 genomes]
rs41324548	0.83[AMR][1000 genomes]
rs4431109	0.86[AFR][1000 genomes]
rs56939966	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57014493	0.81[AFR][1000 genomes]
rs57230068	0.81[AFR][1000 genomes]
rs61102331	0.86[AFR][1000 genomes]
rs6443697	0.86[AFR][1000 genomes]
rs6785627	0.86[AFR][1000 genomes]
rs6803180	0.86[AFR][1000 genomes]
rs6809956	0.81[AFR][1000 genomes]
rs73033579	0.83[AMR][1000 genomes]
rs73035612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043179	0.83[AMR][1000 genomes]
rs73043710	1.00[AMR][1000 genomes]
rs73043715	1.00[AMR][1000 genomes]
rs73043718	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043790	1.00[AMR][1000 genomes]
rs73043794	1.00[AMR][1000 genomes]
rs73043796	1.00[AMR][1000 genomes]
rs73044349	0.83[AMR][1000 genomes]
rs73044398	0.83[AMR][1000 genomes]
rs73045718	0.86[AFR][1000 genomes]
rs73045725	0.83[AFR][1000 genomes]
rs73045755	0.86[AFR][1000 genomes]
rs73045768	0.86[AFR][1000 genomes]
rs73045770	0.81[AFR][1000 genomes]
rs73045772	0.86[AFR][1000 genomes]
rs73045783	0.86[AFR][1000 genomes]
rs73049969	0.86[AFR][1000 genomes]
rs7626867	0.86[AFR][1000 genomes]
rs7629836	0.83[AMR][1000 genomes]
rs7650531	0.86[AFR][1000 genomes]
rs7650731	0.86[AFR][1000 genomes]
rs954850	0.86[AFR][1000 genomes]
rs9682924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9784391	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180128200-180133800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:180128400-180133400	Weak transcription	NHEK	skin
3	chr3:180128400-180133800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:180128800-180133600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:180131400-180136000	Enhancers	HMEC	breast
6	chr3:180132400-180132600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:180132400-180132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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