Variant report

Variant	rs1497892
Chromosome Location	chr3:180171953-180171954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12106782	0.91[AFR][1000 genomes]
rs1391318	1.00[AFR][1000 genomes]
rs1497893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497894	1.00[AFR][1000 genomes]
rs1520616	0.83[AMR][1000 genomes]
rs1607767	0.83[AMR][1000 genomes]
rs16831534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831600	1.00[AMR][1000 genomes]
rs16831605	1.00[AMR][1000 genomes]
rs16831609	1.00[AMR][1000 genomes]
rs16831612	1.00[AMR][1000 genomes]
rs16831616	1.00[AMR][1000 genomes]
rs16831618	1.00[AMR][1000 genomes]
rs16831627	1.00[AFR][1000 genomes]
rs16831662	0.85[AFR][1000 genomes]
rs16831689	1.00[AFR][1000 genomes]
rs16831738	0.86[AFR][1000 genomes]
rs16831747	0.88[AFR][1000 genomes]
rs16831754	0.88[AFR][1000 genomes]
rs2878952	0.83[AMR][1000 genomes]
rs41324548	0.83[AMR][1000 genomes]
rs4431109	1.00[AFR][1000 genomes]
rs56939966	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57014493	0.95[AFR][1000 genomes]
rs57230068	0.95[AFR][1000 genomes]
rs57924206	0.86[AFR][1000 genomes]
rs61102331	1.00[AFR][1000 genomes]
rs6443697	1.00[AFR][1000 genomes]
rs6785627	1.00[AFR][1000 genomes]
rs6803180	1.00[AFR][1000 genomes]
rs6809956	0.95[AFR][1000 genomes]
rs73033579	0.83[AMR][1000 genomes]
rs73035612	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041700	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043179	0.83[AMR][1000 genomes]
rs73043710	1.00[AMR][1000 genomes]
rs73043715	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043790	1.00[AMR][1000 genomes]
rs73043794	1.00[AMR][1000 genomes]
rs73043796	1.00[AMR][1000 genomes]
rs73044349	0.83[AMR][1000 genomes]
rs73044398	0.83[AMR][1000 genomes]
rs73045718	1.00[AFR][1000 genomes]
rs73045725	0.98[AFR][1000 genomes]
rs73045755	1.00[AFR][1000 genomes]
rs73045765	0.91[AFR][1000 genomes]
rs73045768	1.00[AFR][1000 genomes]
rs73045770	0.95[AFR][1000 genomes]
rs73045772	1.00[AFR][1000 genomes]
rs73045783	1.00[AFR][1000 genomes]
rs73049969	1.00[AFR][1000 genomes]
rs73051715	0.93[AFR][1000 genomes]
rs73051732	0.88[AFR][1000 genomes]
rs73051738	0.88[AFR][1000 genomes]
rs7626867	1.00[AFR][1000 genomes]
rs7629836	0.83[AMR][1000 genomes]
rs7650531	1.00[AFR][1000 genomes]
rs7650731	1.00[AFR][1000 genomes]
rs954850	1.00[AFR][1000 genomes]
rs9682924	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9784391	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv516634	chr3:180171589-180184614	Weak transcription Enhancers Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180166400-180174800	Weak transcription	HMEC	breast
2	chr3:180171400-180172000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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