Variant report

Variant	rs6809956
Chromosome Location	chr3:180281273-180281274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12106782	0.86[AFR][1000 genomes]
rs1391318	0.95[AFR][1000 genomes]
rs1497892	0.95[AFR][1000 genomes]
rs1497893	0.95[AFR][1000 genomes]
rs1497894	0.95[AFR][1000 genomes]
rs16831534	0.81[AFR][1000 genomes]
rs16831627	0.95[AFR][1000 genomes]
rs16831662	0.81[AFR][1000 genomes]
rs16831689	0.95[AFR][1000 genomes]
rs16831738	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831747	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831754	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4431109	0.95[AFR][1000 genomes]
rs56939966	0.86[AFR][1000 genomes]
rs57014493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57230068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57924206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61102331	0.95[AFR][1000 genomes]
rs6443697	0.95[AFR][1000 genomes]
rs6785627	0.95[AFR][1000 genomes]
rs6803180	0.95[AFR][1000 genomes]
rs73035612	0.81[AFR][1000 genomes]
rs73041700	0.86[AFR][1000 genomes]
rs73043718	0.95[AFR][1000 genomes]
rs73045718	0.95[AFR][1000 genomes]
rs73045725	0.93[AFR][1000 genomes]
rs73045755	0.95[AFR][1000 genomes]
rs73045765	0.86[AFR][1000 genomes]
rs73045768	0.95[AFR][1000 genomes]
rs73045770	0.91[AFR][1000 genomes]
rs73045772	0.95[AFR][1000 genomes]
rs73045783	0.95[AFR][1000 genomes]
rs73049969	0.95[AFR][1000 genomes]
rs73051715	0.98[AFR][1000 genomes]
rs73051732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051751	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626867	0.95[AFR][1000 genomes]
rs7650531	0.95[AFR][1000 genomes]
rs7650731	0.95[AFR][1000 genomes]
rs954850	0.95[AFR][1000 genomes]
rs9682924	0.81[AFR][1000 genomes]
rs9784391	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3342538	chr3:180280998-180281296	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180280800-180281800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:180281000-180281600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:180281200-180281800	Active TSS	Brain Hippocampus Middle	brain

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