Variant report

Variant	rs16831754
Chromosome Location	chr3:180309346-180309347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1391318	0.88[AFR][1000 genomes]
rs1497892	0.88[AFR][1000 genomes]
rs1497893	0.88[AFR][1000 genomes]
rs1497894	0.88[AFR][1000 genomes]
rs16831627	0.88[AFR][1000 genomes]
rs16831689	0.88[AFR][1000 genomes]
rs16831738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4431109	0.88[AFR][1000 genomes]
rs57014493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57230068	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57924206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61102331	0.88[AFR][1000 genomes]
rs6443697	0.88[AFR][1000 genomes]
rs6785627	0.88[AFR][1000 genomes]
rs6803180	0.88[AFR][1000 genomes]
rs6809956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043718	0.88[AFR][1000 genomes]
rs73045718	0.88[AFR][1000 genomes]
rs73045725	0.86[AFR][1000 genomes]
rs73045755	0.88[AFR][1000 genomes]
rs73045768	0.88[AFR][1000 genomes]
rs73045770	0.88[AFR][1000 genomes]
rs73045772	0.88[AFR][1000 genomes]
rs73045783	0.88[AFR][1000 genomes]
rs73049969	0.88[AFR][1000 genomes]
rs73051715	0.90[AFR][1000 genomes]
rs73051732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626867	0.88[AFR][1000 genomes]
rs7650531	0.88[AFR][1000 genomes]
rs7650731	0.88[AFR][1000 genomes]
rs954850	0.88[AFR][1000 genomes]
rs9784391	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180297200-180312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180298000-180309800	Weak transcription	Brain Anterior Caudate	brain
3	chr3:180307600-180310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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