Variant report

Variant	rs73045725
Chromosome Location	chr3:180191175-180191176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12106782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1391318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497892	0.98[AFR][1000 genomes]
rs1497893	0.98[AFR][1000 genomes]
rs1497894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831534	0.83[AFR][1000 genomes]
rs16831627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831662	0.83[AFR][1000 genomes]
rs16831689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831738	0.83[AFR][1000 genomes]
rs16831747	0.86[AFR][1000 genomes]
rs16831754	0.86[AFR][1000 genomes]
rs4431109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56939966	0.88[AFR][1000 genomes]
rs57014493	0.93[AFR][1000 genomes]
rs57230068	0.93[AFR][1000 genomes]
rs57744331	1.00[AMR][1000 genomes]
rs57924206	0.83[AFR][1000 genomes]
rs60339377	0.83[AMR][1000 genomes]
rs61102331	0.98[AFR][1000 genomes]
rs6443697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6767567	1.00[AMR][1000 genomes]
rs6785627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793428	1.00[AMR][1000 genomes]
rs6802873	1.00[AMR][1000 genomes]
rs6803180	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6803379	1.00[AMR][1000 genomes]
rs6805364	1.00[AMR][1000 genomes]
rs6809956	0.93[AFR][1000 genomes]
rs73035612	0.83[AFR][1000 genomes]
rs73041700	0.88[AFR][1000 genomes]
rs73043718	0.98[AFR][1000 genomes]
rs73045707	1.00[AMR][1000 genomes]
rs73045718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045724	1.00[AMR][1000 genomes]
rs73045755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045768	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049969	0.98[AFR][1000 genomes]
rs73051715	0.90[AFR][1000 genomes]
rs73051732	0.86[AFR][1000 genomes]
rs73051738	0.86[AFR][1000 genomes]
rs7626867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643519	1.00[AMR][1000 genomes]
rs7650531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs954850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682924	0.83[AFR][1000 genomes]
rs9757646	0.83[AMR][1000 genomes]
rs9784391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180187400-180205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180187600-180193800	Weak transcription	HMEC	breast
3	chr3:180187600-180198800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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