Variant report
| Variant | rs16831738 |
|---|---|
| Chromosome Location | chr3:180291929-180291930 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1391318 | 0.86[AFR][1000 genomes] |
| rs1497892 | 0.86[AFR][1000 genomes] |
| rs1497893 | 0.86[AFR][1000 genomes] |
| rs1497894 | 0.86[AFR][1000 genomes] |
| rs16831627 | 0.86[AFR][1000 genomes] |
| rs16831689 | 0.86[AFR][1000 genomes] |
| rs16831747 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16831754 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4431109 | 0.86[AFR][1000 genomes] |
| rs57014493 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57230068 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57924206 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61102331 | 0.86[AFR][1000 genomes] |
| rs6443697 | 0.86[AFR][1000 genomes] |
| rs6785627 | 0.86[AFR][1000 genomes] |
| rs6803180 | 0.86[AFR][1000 genomes] |
| rs6809956 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73043718 | 0.86[AFR][1000 genomes] |
| rs73045718 | 0.86[AFR][1000 genomes] |
| rs73045725 | 0.83[AFR][1000 genomes] |
| rs73045755 | 0.86[AFR][1000 genomes] |
| rs73045768 | 0.86[AFR][1000 genomes] |
| rs73045770 | 0.86[AFR][1000 genomes] |
| rs73045772 | 0.86[AFR][1000 genomes] |
| rs73045783 | 0.86[AFR][1000 genomes] |
| rs73049969 | 0.86[AFR][1000 genomes] |
| rs73051715 | 0.88[AFR][1000 genomes] |
| rs73051732 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73051738 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73051751 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7626867 | 0.86[AFR][1000 genomes] |
| rs7650531 | 0.86[AFR][1000 genomes] |
| rs7650731 | 0.86[AFR][1000 genomes] |
| rs954850 | 0.86[AFR][1000 genomes] |
| rs9784391 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007831 | chr3:180162003-180348203 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv536818 | chr3:180162003-180348203 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:180285600-180293200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
