Variant report

Variant	rs57924206
Chromosome Location	chr3:180291895-180291896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1391318	0.86[AFR][1000 genomes]
rs1497892	0.86[AFR][1000 genomes]
rs1497893	0.86[AFR][1000 genomes]
rs1497894	0.86[AFR][1000 genomes]
rs16831627	0.86[AFR][1000 genomes]
rs16831689	0.86[AFR][1000 genomes]
rs16831738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4431109	0.86[AFR][1000 genomes]
rs57014493	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57230068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61102331	0.86[AFR][1000 genomes]
rs6443697	0.86[AFR][1000 genomes]
rs6785627	0.86[AFR][1000 genomes]
rs6803180	0.86[AFR][1000 genomes]
rs6809956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043718	0.86[AFR][1000 genomes]
rs73045718	0.86[AFR][1000 genomes]
rs73045725	0.83[AFR][1000 genomes]
rs73045755	0.86[AFR][1000 genomes]
rs73045768	0.86[AFR][1000 genomes]
rs73045770	0.86[AFR][1000 genomes]
rs73045772	0.86[AFR][1000 genomes]
rs73045783	0.86[AFR][1000 genomes]
rs73049969	0.86[AFR][1000 genomes]
rs73051715	0.88[AFR][1000 genomes]
rs73051732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051751	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626867	0.86[AFR][1000 genomes]
rs7650531	0.86[AFR][1000 genomes]
rs7650731	0.86[AFR][1000 genomes]
rs954850	0.86[AFR][1000 genomes]
rs9784391	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180285600-180293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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