Variant report

Variant	rs56939966
Chromosome Location	chr3:180160709-180160710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12106782	0.82[AFR][1000 genomes]
rs1391318	0.90[AFR][1000 genomes]
rs1497892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497893	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497894	0.90[AFR][1000 genomes]
rs1520616	0.83[AMR][1000 genomes]
rs1607767	0.83[AMR][1000 genomes]
rs16831534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831600	1.00[AMR][1000 genomes]
rs16831605	1.00[AMR][1000 genomes]
rs16831609	1.00[AMR][1000 genomes]
rs16831612	1.00[AMR][1000 genomes]
rs16831616	1.00[AMR][1000 genomes]
rs16831618	1.00[AMR][1000 genomes]
rs16831627	0.90[AFR][1000 genomes]
rs16831689	0.90[AFR][1000 genomes]
rs2878952	0.83[AMR][1000 genomes]
rs41324548	0.83[AMR][1000 genomes]
rs4431109	0.90[AFR][1000 genomes]
rs57014493	0.86[AFR][1000 genomes]
rs57230068	0.86[AFR][1000 genomes]
rs61102331	0.90[AFR][1000 genomes]
rs6443697	0.90[AFR][1000 genomes]
rs6785627	0.90[AFR][1000 genomes]
rs6803180	0.90[AFR][1000 genomes]
rs6809956	0.86[AFR][1000 genomes]
rs73033579	0.83[AMR][1000 genomes]
rs73035612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043179	0.83[AMR][1000 genomes]
rs73043710	1.00[AMR][1000 genomes]
rs73043715	1.00[AMR][1000 genomes]
rs73043718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043790	1.00[AMR][1000 genomes]
rs73043794	1.00[AMR][1000 genomes]
rs73043796	1.00[AMR][1000 genomes]
rs73044349	0.83[AMR][1000 genomes]
rs73044398	0.83[AMR][1000 genomes]
rs73045718	0.90[AFR][1000 genomes]
rs73045725	0.88[AFR][1000 genomes]
rs73045755	0.90[AFR][1000 genomes]
rs73045765	0.82[AFR][1000 genomes]
rs73045768	0.90[AFR][1000 genomes]
rs73045770	0.86[AFR][1000 genomes]
rs73045772	0.90[AFR][1000 genomes]
rs73045783	0.90[AFR][1000 genomes]
rs73049969	0.90[AFR][1000 genomes]
rs73051715	0.83[AFR][1000 genomes]
rs7626867	0.90[AFR][1000 genomes]
rs7629836	0.83[AMR][1000 genomes]
rs7650531	0.90[AFR][1000 genomes]
rs7650731	0.90[AFR][1000 genomes]
rs954850	0.90[AFR][1000 genomes]
rs9682924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9784391	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180159000-180162800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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