Variant report

Variant	rs73075350
Chromosome Location	chr3:55938707-55938708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1023882	1.00[ASN][1000 genomes]
rs55926504	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56163631	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56378219	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73075372	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73076937	1.00[ASN][1000 genomes]
rs73076953	1.00[ASN][1000 genomes]
rs73076956	1.00[ASN][1000 genomes]
rs73078766	1.00[ASN][1000 genomes]
rs73078777	1.00[ASN][1000 genomes]
rs73083342	1.00[ASN][1000 genomes]
rs73083347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083379	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083381	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086157	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086168	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086178	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086185	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086190	1.00[ASN][1000 genomes]
rs73086191	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086196	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73089162	1.00[ASN][1000 genomes]
rs73089166	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73089189	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73089267	1.00[ASN][1000 genomes]
rs73089280	1.00[ASN][1000 genomes]
rs73091043	1.00[ASN][1000 genomes]
rs73091049	1.00[ASN][1000 genomes]
rs73091050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55930200-55943200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:55931800-55938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:55936600-55944000	Enhancers	Fetal Heart	heart
4	chr3:55936800-55941000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:55937000-55941600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:55937800-55938800	Enhancers	Colon Smooth Muscle	Colon
7	chr3:55938600-55939200	Enhancers	Hela-S3	cervix

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