Variant report

Variant	rs73089162
Chromosome Location	chr3:56043556-56043557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1023882	1.00[ASN][1000 genomes]
rs55926504	1.00[ASN][1000 genomes]
rs56132867	1.00[ASN][1000 genomes]
rs56163631	1.00[ASN][1000 genomes]
rs56283068	1.00[ASN][1000 genomes]
rs56304204	1.00[ASN][1000 genomes]
rs56317923	1.00[ASN][1000 genomes]
rs56378219	1.00[ASN][1000 genomes]
rs73072703	1.00[ASN][1000 genomes]
rs73072704	1.00[ASN][1000 genomes]
rs73075350	1.00[ASN][1000 genomes]
rs73075372	1.00[ASN][1000 genomes]
rs73078455	1.00[ASN][1000 genomes]
rs73078456	1.00[ASN][1000 genomes]
rs73078458	1.00[ASN][1000 genomes]
rs73078461	1.00[ASN][1000 genomes]
rs73078464	1.00[ASN][1000 genomes]
rs73078465	1.00[ASN][1000 genomes]
rs73078470	1.00[ASN][1000 genomes]
rs73078474	1.00[ASN][1000 genomes]
rs73078477	1.00[ASN][1000 genomes]
rs73078479	1.00[ASN][1000 genomes]
rs73078482	1.00[ASN][1000 genomes]
rs73078483	1.00[ASN][1000 genomes]
rs73078485	1.00[ASN][1000 genomes]
rs73078488	1.00[ASN][1000 genomes]
rs73078496	1.00[ASN][1000 genomes]
rs73078547	1.00[ASN][1000 genomes]
rs73078766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078777	1.00[ASN][1000 genomes]
rs73080405	1.00[ASN][1000 genomes]
rs73080407	1.00[ASN][1000 genomes]
rs73080408	1.00[ASN][1000 genomes]
rs73083342	1.00[ASN][1000 genomes]
rs73083347	1.00[ASN][1000 genomes]
rs73083357	1.00[ASN][1000 genomes]
rs73083359	1.00[ASN][1000 genomes]
rs73083368	1.00[ASN][1000 genomes]
rs73083374	1.00[ASN][1000 genomes]
rs73083379	1.00[ASN][1000 genomes]
rs73083381	1.00[ASN][1000 genomes]
rs73086157	1.00[ASN][1000 genomes]
rs73086168	1.00[ASN][1000 genomes]
rs73086178	1.00[ASN][1000 genomes]
rs73086185	1.00[ASN][1000 genomes]
rs73086190	1.00[ASN][1000 genomes]
rs73086191	1.00[ASN][1000 genomes]
rs73086196	1.00[ASN][1000 genomes]
rs73089166	1.00[ASN][1000 genomes]
rs73089189	1.00[ASN][1000 genomes]
rs73089267	1.00[ASN][1000 genomes]
rs73089280	1.00[ASN][1000 genomes]
rs73091043	1.00[ASN][1000 genomes]
rs73091049	1.00[ASN][1000 genomes]
rs73091050	1.00[ASN][1000 genomes]
rs73091252	1.00[ASN][1000 genomes]
rs73091253	1.00[ASN][1000 genomes]
rs73091256	1.00[ASN][1000 genomes]
rs73091258	1.00[ASN][1000 genomes]
rs73091259	1.00[ASN][1000 genomes]
rs73091260	1.00[ASN][1000 genomes]
rs73091265	1.00[ASN][1000 genomes]
rs73091267	1.00[ASN][1000 genomes]
rs73091268	1.00[ASN][1000 genomes]
rs73091269	1.00[ASN][1000 genomes]
rs73091270	1.00[ASN][1000 genomes]
rs7634259	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56033000-56052000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:56033200-56046800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56039800-56052400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:56041400-56046600	Weak transcription	Fetal Brain Female	brain
5	chr3:56041600-56044400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:56041600-56054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:56041800-56045600	Weak transcription	Fetal Heart	heart
8	chr3:56041800-56054000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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