Variant report

Variant	rs73086190
Chromosome Location	chr3:56004160-56004161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56003540..56006310-chr3:56015032..56016814,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1023882	1.00[ASN][1000 genomes]
rs55926504	1.00[ASN][1000 genomes]
rs56132867	1.00[ASN][1000 genomes]
rs56163631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56283068	1.00[ASN][1000 genomes]
rs56304204	1.00[ASN][1000 genomes]
rs56317923	1.00[ASN][1000 genomes]
rs56378219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73072703	1.00[ASN][1000 genomes]
rs73072704	1.00[ASN][1000 genomes]
rs73075350	1.00[ASN][1000 genomes]
rs73075372	1.00[ASN][1000 genomes]
rs73076937	1.00[ASN][1000 genomes]
rs73076953	1.00[ASN][1000 genomes]
rs73076956	1.00[ASN][1000 genomes]
rs73078455	1.00[ASN][1000 genomes]
rs73078456	1.00[ASN][1000 genomes]
rs73078458	1.00[ASN][1000 genomes]
rs73078461	1.00[ASN][1000 genomes]
rs73078464	1.00[ASN][1000 genomes]
rs73078465	1.00[ASN][1000 genomes]
rs73078470	1.00[ASN][1000 genomes]
rs73078474	1.00[ASN][1000 genomes]
rs73078477	1.00[ASN][1000 genomes]
rs73078479	1.00[ASN][1000 genomes]
rs73078482	1.00[ASN][1000 genomes]
rs73078483	1.00[ASN][1000 genomes]
rs73078485	1.00[ASN][1000 genomes]
rs73078488	1.00[ASN][1000 genomes]
rs73078496	1.00[ASN][1000 genomes]
rs73078766	1.00[ASN][1000 genomes]
rs73078777	1.00[ASN][1000 genomes]
rs73080405	1.00[ASN][1000 genomes]
rs73080407	1.00[ASN][1000 genomes]
rs73080408	1.00[ASN][1000 genomes]
rs73083342	1.00[ASN][1000 genomes]
rs73083347	1.00[ASN][1000 genomes]
rs73083357	1.00[ASN][1000 genomes]
rs73083359	1.00[ASN][1000 genomes]
rs73083368	1.00[ASN][1000 genomes]
rs73083374	1.00[ASN][1000 genomes]
rs73083379	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73089162	1.00[ASN][1000 genomes]
rs73089166	1.00[ASN][1000 genomes]
rs73089189	1.00[ASN][1000 genomes]
rs73089267	1.00[ASN][1000 genomes]
rs73089280	1.00[ASN][1000 genomes]
rs73091043	1.00[ASN][1000 genomes]
rs73091049	1.00[ASN][1000 genomes]
rs73091050	1.00[ASN][1000 genomes]
rs73091252	1.00[ASN][1000 genomes]
rs73091253	1.00[ASN][1000 genomes]
rs73091256	1.00[ASN][1000 genomes]
rs73091258	1.00[ASN][1000 genomes]
rs73091259	1.00[ASN][1000 genomes]
rs73091260	1.00[ASN][1000 genomes]
rs73091265	1.00[ASN][1000 genomes]
rs73091267	1.00[ASN][1000 genomes]
rs73091268	1.00[ASN][1000 genomes]
rs73091269	1.00[ASN][1000 genomes]
rs73091270	1.00[ASN][1000 genomes]
rs7634259	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55993000-56009600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56003400-56005200	Enhancers	Fetal Heart	heart
3	chr3:56003800-56017000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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