Variant report
| Variant | rs73079872 |
|---|---|
| Chromosome Location | chr3:56570185-56570186 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:56569030..56570634-chr3:56588357..56591686,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180376 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1317750 | 1.00[ASN][1000 genomes] |
| rs55968316 | 1.00[ASN][1000 genomes] |
| rs56138618 | 1.00[ASN][1000 genomes] |
| rs56286622 | 1.00[ASN][1000 genomes] |
| rs56354761 | 1.00[ASN][1000 genomes] |
| rs58449031 | 1.00[ASN][1000 genomes] |
| rs60419369 | 1.00[ASN][1000 genomes] |
| rs6802166 | 1.00[ASN][1000 genomes] |
| rs73073904 | 1.00[ASN][1000 genomes] |
| rs73073905 | 1.00[ASN][1000 genomes] |
| rs73073910 | 1.00[ASN][1000 genomes] |
| rs73073974 | 1.00[ASN][1000 genomes] |
| rs73073978 | 1.00[ASN][1000 genomes] |
| rs73073985 | 1.00[ASN][1000 genomes] |
| rs73073992 | 1.00[ASN][1000 genomes] |
| rs73075823 | 1.00[ASN][1000 genomes] |
| rs73075825 | 1.00[ASN][1000 genomes] |
| rs73075831 | 1.00[ASN][1000 genomes] |
| rs73075832 | 1.00[ASN][1000 genomes] |
| rs73075858 | 1.00[ASN][1000 genomes] |
| rs73075865 | 1.00[ASN][1000 genomes] |
| rs73075881 | 1.00[ASN][1000 genomes] |
| rs73075888 | 1.00[ASN][1000 genomes] |
| rs73075891 | 1.00[ASN][1000 genomes] |
| rs73075902 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73077703 | 1.00[ASN][1000 genomes] |
| rs73077704 | 1.00[ASN][1000 genomes] |
| rs73077719 | 1.00[ASN][1000 genomes] |
| rs73079832 | 1.00[EUR][1000 genomes] |
| rs73083759 | 1.00[ASN][1000 genomes] |
| rs73090547 | 1.00[ASN][1000 genomes] |
| rs73090555 | 1.00[ASN][1000 genomes] |
| rs73090565 | 1.00[ASN][1000 genomes] |
| rs73090570 | 1.00[ASN][1000 genomes] |
| rs73090572 | 1.00[ASN][1000 genomes] |
| rs7615413 | 1.00[ASN][1000 genomes] |
| rs969242 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347557 | chr3:56466500-56619322 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv876817 | chr3:56517253-56649282 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
