Variant report

Variant	rs73090570
Chromosome Location	chr3:56399854-56399855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1317750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55968316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56216904	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56227347	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56286622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56354761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56383777	1.00[ASN][1000 genomes]
rs56988974	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57708875	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58067804	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58449031	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58720638	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59412382	1.00[ASN][1000 genomes]
rs59923603	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60120946	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60419369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61092323	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61163420	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61248828	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61524165	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073992	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075832	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075865	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075881	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075888	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075891	1.00[ASN][1000 genomes]
rs73075902	1.00[ASN][1000 genomes]
rs73077703	1.00[ASN][1000 genomes]
rs73077704	1.00[ASN][1000 genomes]
rs73077719	1.00[ASN][1000 genomes]
rs73078547	1.00[ASN][1000 genomes]
rs73079872	1.00[ASN][1000 genomes]
rs73082476	1.00[ASN][1000 genomes]
rs73086422	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086435	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086436	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086437	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086439	1.00[ASN][1000 genomes]
rs73086440	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086441	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086449	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088517	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088520	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088522	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088532	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088534	1.00[ASN][1000 genomes]
rs73090547	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969242	1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56390400-56401000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:56390600-56406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56391800-56400200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:56391800-56400400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:56391800-56400600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:56392000-56400600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:56396800-56401400	Enhancers	Liver	Liver
9	chr3:56398800-56400600	Enhancers	Stomach Mucosa	stomach
10	chr3:56398800-56401200	Enhancers	Brain Angular Gyrus	brain
11	chr3:56398800-56401400	Enhancers	Brain Hippocampus Middle	brain
12	chr3:56399000-56400000	Weak transcription	Gastric	stomach
13	chr3:56399000-56402400	Enhancers	HSMMtube	muscle
14	chr3:56399200-56400400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:56399400-56400200	Enhancers	Right Atrium	heart
16	chr3:56399400-56400600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:56399400-56401000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:56399400-56401200	Enhancers	Brain Germinal Matrix	brain
19	chr3:56399400-56401200	Enhancers	Fetal Brain Female	brain
20	chr3:56399400-56401400	Enhancers	Fetal Brain Male	brain
21	chr3:56399600-56400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:56399600-56401200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:56399800-56400400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr3:56399800-56400800	Enhancers	Adipose Nuclei	Adipose
25	chr3:56399800-56401400	Enhancers	Brain Substantia Nigra	brain
26	chr3:56399800-56401600	Enhancers	Brain Cingulate Gyrus	brain

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