Variant report
| Variant | rs969242 |
|---|---|
| Chromosome Location | chr3:56430513-56430514 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:64)
| rs_ID | r2[population] |
|---|---|
| rs1317750 | 1.00[ASN][1000 genomes] |
| rs55968316 | 1.00[ASN][1000 genomes] |
| rs56138618 | 1.00[ASN][1000 genomes] |
| rs56216904 | 1.00[ASN][1000 genomes] |
| rs56227347 | 1.00[ASN][1000 genomes] |
| rs56286622 | 1.00[ASN][1000 genomes] |
| rs56354761 | 1.00[ASN][1000 genomes] |
| rs56383777 | 1.00[ASN][1000 genomes] |
| rs56988974 | 1.00[ASN][1000 genomes] |
| rs57708875 | 1.00[ASN][1000 genomes] |
| rs58067804 | 1.00[ASN][1000 genomes] |
| rs58449031 | 1.00[ASN][1000 genomes] |
| rs58720638 | 1.00[ASN][1000 genomes] |
| rs59412382 | 1.00[ASN][1000 genomes] |
| rs59923603 | 1.00[ASN][1000 genomes] |
| rs60120946 | 1.00[ASN][1000 genomes] |
| rs60419369 | 1.00[ASN][1000 genomes] |
| rs61092323 | 1.00[ASN][1000 genomes] |
| rs61163420 | 1.00[ASN][1000 genomes] |
| rs61248828 | 1.00[ASN][1000 genomes] |
| rs61524165 | 1.00[ASN][1000 genomes] |
| rs6802166 | 1.00[ASN][1000 genomes] |
| rs73073904 | 1.00[ASN][1000 genomes] |
| rs73073905 | 1.00[ASN][1000 genomes] |
| rs73073910 | 1.00[ASN][1000 genomes] |
| rs73073974 | 1.00[ASN][1000 genomes] |
| rs73073978 | 1.00[ASN][1000 genomes] |
| rs73073985 | 1.00[ASN][1000 genomes] |
| rs73073992 | 1.00[ASN][1000 genomes] |
| rs73075823 | 1.00[ASN][1000 genomes] |
| rs73075825 | 1.00[ASN][1000 genomes] |
| rs73075831 | 1.00[ASN][1000 genomes] |
| rs73075832 | 1.00[ASN][1000 genomes] |
| rs73075858 | 1.00[ASN][1000 genomes] |
| rs73075865 | 1.00[ASN][1000 genomes] |
| rs73075881 | 1.00[ASN][1000 genomes] |
| rs73075888 | 1.00[ASN][1000 genomes] |
| rs73075891 | 1.00[ASN][1000 genomes] |
| rs73075902 | 1.00[ASN][1000 genomes] |
| rs73077703 | 1.00[ASN][1000 genomes] |
| rs73077704 | 1.00[ASN][1000 genomes] |
| rs73077719 | 1.00[ASN][1000 genomes] |
| rs73078547 | 1.00[ASN][1000 genomes] |
| rs73079872 | 1.00[ASN][1000 genomes] |
| rs73082476 | 1.00[ASN][1000 genomes] |
| rs73086422 | 1.00[ASN][1000 genomes] |
| rs73086435 | 1.00[ASN][1000 genomes] |
| rs73086436 | 1.00[ASN][1000 genomes] |
| rs73086437 | 1.00[ASN][1000 genomes] |
| rs73086439 | 1.00[ASN][1000 genomes] |
| rs73086440 | 1.00[ASN][1000 genomes] |
| rs73086441 | 1.00[ASN][1000 genomes] |
| rs73086449 | 1.00[ASN][1000 genomes] |
| rs73088517 | 1.00[ASN][1000 genomes] |
| rs73088520 | 1.00[ASN][1000 genomes] |
| rs73088522 | 1.00[ASN][1000 genomes] |
| rs73088532 | 1.00[ASN][1000 genomes] |
| rs73088534 | 1.00[ASN][1000 genomes] |
| rs73090547 | 1.00[ASN][1000 genomes] |
| rs73090555 | 1.00[ASN][1000 genomes] |
| rs73090565 | 1.00[ASN][1000 genomes] |
| rs73090570 | 1.00[ASN][1000 genomes] |
| rs73090572 | 1.00[ASN][1000 genomes] |
| rs7615413 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876816 | chr3:56422771-56457705 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:56424000-56447400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr3:56428200-56433200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr3:56429800-56430800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 4 | chr3:56430000-56430800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
