Variant report

Variant	rs59923603
Chromosome Location	chr3:56326973-56326974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56326789..56328754-chr3:56329827..56332078,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs12637784	0.82[AFR][1000 genomes]
rs1317750	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41521744	0.82[AFR][1000 genomes]
rs55968316	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132867	1.00[ASN][1000 genomes]
rs56138618	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56216904	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56227347	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56283068	1.00[ASN][1000 genomes]
rs56286622	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56304204	1.00[ASN][1000 genomes]
rs56317923	1.00[ASN][1000 genomes]
rs56354761	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56383777	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56988974	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57708875	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58067804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58449031	1.00[ASN][1000 genomes]
rs58720638	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59412382	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60120946	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60419369	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61092323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61163420	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61248828	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61524165	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802166	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73072703	1.00[ASN][1000 genomes]
rs73072704	1.00[ASN][1000 genomes]
rs73073904	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073905	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073910	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073974	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073985	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073992	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075823	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075831	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075832	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075858	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075865	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075881	1.00[ASN][1000 genomes]
rs73075888	1.00[ASN][1000 genomes]
rs73075891	1.00[ASN][1000 genomes]
rs73075902	1.00[ASN][1000 genomes]
rs73077703	1.00[ASN][1000 genomes]
rs73077704	1.00[ASN][1000 genomes]
rs73077719	1.00[ASN][1000 genomes]
rs73078455	1.00[ASN][1000 genomes]
rs73078456	1.00[ASN][1000 genomes]
rs73078458	1.00[ASN][1000 genomes]
rs73078461	1.00[ASN][1000 genomes]
rs73078464	1.00[ASN][1000 genomes]
rs73078465	1.00[ASN][1000 genomes]
rs73078470	1.00[ASN][1000 genomes]
rs73078474	1.00[ASN][1000 genomes]
rs73078477	1.00[ASN][1000 genomes]
rs73078479	1.00[ASN][1000 genomes]
rs73078482	1.00[ASN][1000 genomes]
rs73078483	1.00[ASN][1000 genomes]
rs73078485	1.00[ASN][1000 genomes]
rs73078488	1.00[ASN][1000 genomes]
rs73078496	1.00[ASN][1000 genomes]
rs73078547	1.00[ASN][1000 genomes]
rs73080405	1.00[ASN][1000 genomes]
rs73080407	1.00[ASN][1000 genomes]
rs73080408	1.00[ASN][1000 genomes]
rs73082476	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086436	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086437	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086439	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086440	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088517	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088534	1.00[ASN][1000 genomes]
rs73089267	1.00[ASN][1000 genomes]
rs73089280	1.00[ASN][1000 genomes]
rs73090547	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090555	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090565	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090570	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090572	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091252	1.00[ASN][1000 genomes]
rs73091253	1.00[ASN][1000 genomes]
rs73091256	1.00[ASN][1000 genomes]
rs73091258	1.00[ASN][1000 genomes]
rs73091259	1.00[ASN][1000 genomes]
rs73091260	1.00[ASN][1000 genomes]
rs73091265	1.00[ASN][1000 genomes]
rs73091267	1.00[ASN][1000 genomes]
rs73091268	1.00[ASN][1000 genomes]
rs73091269	1.00[ASN][1000 genomes]
rs73091270	1.00[ASN][1000 genomes]
rs7615413	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634259	1.00[ASN][1000 genomes]
rs969242	1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56323200-56336800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56323200-56337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56323400-56336600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:56323600-56336600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:56325200-56327000	Enhancers	HUVEC	blood vessel
6	chr3:56325200-56337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:56326000-56327800	Weak transcription	Fetal Brain Female	brain
8	chr3:56326200-56330000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:56326200-56336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:56326200-56337200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:56326400-56328200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:56326400-56328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:56326400-56328400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:56326400-56329400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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