Variant report

Variant	rs12637784
Chromosome Location	chr3:56318675-56318676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11707881	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11707901	0.83[EUR][1000 genomes]
rs11719428	0.80[EUR][1000 genomes]
rs11720894	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12629096	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12633004	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638786	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12639313	0.83[EUR][1000 genomes]
rs1452208	0.83[EUR][1000 genomes]
rs17235431	0.83[EUR][1000 genomes]
rs17235466	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17235494	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17634512	0.83[EUR][1000 genomes]
rs17825368	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869158	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1869159	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34270989	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35721039	0.84[EUR][1000 genomes]
rs41521744	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55853651	0.82[EUR][1000 genomes]
rs56227347	0.82[AFR][1000 genomes]
rs56988974	0.82[AFR][1000 genomes]
rs57708875	0.82[AFR][1000 genomes]
rs58720638	0.83[AFR][1000 genomes]
rs59923603	0.82[AFR][1000 genomes]
rs60879071	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60900173	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61163420	0.82[AFR][1000 genomes]
rs61248828	0.82[AFR][1000 genomes]
rs6763223	0.83[EUR][1000 genomes]
rs6763275	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6774658	0.83[EUR][1000 genomes]
rs6786714	0.83[EUR][1000 genomes]
rs6794479	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73080547	0.83[EUR][1000 genomes]
rs73080560	0.84[EUR][1000 genomes]
rs73086405	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73086437	0.82[AFR][1000 genomes]
rs7616016	0.81[EUR][1000 genomes]
rs7640618	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs991335	0.82[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56306000-56319200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56312200-56319400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:56314400-56319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56316400-56322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:56316800-56318800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:56317400-56319400	Weak transcription	HUVEC	blood vessel
7	chr3:56318200-56319200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:56318200-56320000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56318400-56319200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:56318400-56319200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:56318400-56319200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:56318400-56320000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:56318600-56324000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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