Variant report

Variant	rs17235466
Chromosome Location	chr3:56284305-56284306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56241598..56243485-chr3:56283452..56286436,3	K562	blood:
2	chr3:56241751..56243485-chr3:56283452..56285737,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11130505	0.84[EUR][1000 genomes]
rs11707881	0.96[EUR][1000 genomes]
rs11707901	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11718962	0.84[EUR][1000 genomes]
rs11719428	0.95[CEU][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11720894	0.96[EUR][1000 genomes]
rs12488385	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12490423	0.80[EUR][1000 genomes]
rs12629096	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12630006	0.82[EUR][1000 genomes]
rs12633004	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12637784	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12638786	0.96[EUR][1000 genomes]
rs12639313	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13081402	0.83[EUR][1000 genomes]
rs13081691	0.83[EUR][1000 genomes]
rs1452208	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452209	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1452210	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1485677	0.85[AMR][1000 genomes]
rs17235431	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235452	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17235494	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17634512	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17825368	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1869158	0.96[EUR][1000 genomes]
rs1869159	0.96[EUR][1000 genomes]
rs2123178	0.83[EUR][1000 genomes]
rs34270989	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34484508	0.83[EUR][1000 genomes]
rs35721039	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41521744	0.96[EUR][1000 genomes]
rs4974188	0.83[EUR][1000 genomes]
rs55853651	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55928895	0.81[EUR][1000 genomes]
rs60879071	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60900173	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6763223	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6763275	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6764950	0.91[CEU][hapmap];0.87[JPT][hapmap]
rs6770399	0.82[EUR][1000 genomes]
rs6774658	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6783930	0.82[EUR][1000 genomes]
rs6786714	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6794479	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73080547	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73080560	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73086405	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7616016	1.00[CEU][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7640618	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7649615	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs901151	0.84[EUR][1000 genomes]
rs9311598	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs9880047	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs991335	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56281000-56285600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:56281000-56286800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:56281800-56285200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:56282000-56285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:56283600-56285600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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