Variant report

Variant	rs6783930
Chromosome Location	chr3:56302946-56302947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11130505	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11707881	0.81[EUR][1000 genomes]
rs11718962	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11720894	0.81[EUR][1000 genomes]
rs12630006	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633004	0.83[EUR][1000 genomes]
rs12638786	0.80[EUR][1000 genomes]
rs13081402	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081691	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17235466	0.82[EUR][1000 genomes]
rs17235494	0.80[EUR][1000 genomes]
rs17825368	0.82[EUR][1000 genomes]
rs1869158	0.80[EUR][1000 genomes]
rs1869159	0.80[EUR][1000 genomes]
rs2123178	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34484508	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41521744	0.80[EUR][1000 genomes]
rs4974188	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60879071	0.81[EUR][1000 genomes]
rs60900173	0.81[EUR][1000 genomes]
rs66697960	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6763275	0.81[EUR][1000 genomes]
rs6770399	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6781843	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6794479	0.82[EUR][1000 genomes]
rs73086405	0.82[EUR][1000 genomes]
rs7640618	0.82[EUR][1000 genomes]
rs901151	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:56290200-56303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56299400-56303200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:56301800-56303600	Weak transcription	Fetal Brain Male	brain
5	chr3:56302400-56303400	Weak transcription	Fetal Kidney	kidney
6	chr3:56302800-56304600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links