Variant report

Variant	rs901151
Chromosome Location	chr3:56287524-56287525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11130505	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11707881	0.80[EUR][1000 genomes]
rs11718962	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720894	0.80[EUR][1000 genomes]
rs12630006	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12633004	0.83[EUR][1000 genomes]
rs13081402	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13081691	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17235466	0.84[EUR][1000 genomes]
rs17825368	0.81[EUR][1000 genomes]
rs2123178	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34484508	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974188	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60879071	0.80[EUR][1000 genomes]
rs60900173	0.80[EUR][1000 genomes]
rs66697960	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6763275	0.80[EUR][1000 genomes]
rs6770399	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771628	0.81[EUR][1000 genomes]
rs6781843	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6783930	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6794479	0.84[EUR][1000 genomes]
rs73086405	0.81[EUR][1000 genomes]
rs7640618	0.81[EUR][1000 genomes]
rs9809991	0.81[EUR][1000 genomes]
rs9847090	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs901151	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56285200-56288000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:56285400-56288000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:56286000-56287600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:56286800-56288800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:56287000-56287800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:56287000-56288400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:56287000-56288800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:56287000-56288800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:56287200-56288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:56287400-56287800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:56287400-56288800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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