Variant report

Variant	rs60900173
Chromosome Location	chr3:56312036-56312037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11130505	0.80[EUR][1000 genomes]
rs11707881	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11707901	0.85[EUR][1000 genomes]
rs11718962	0.80[EUR][1000 genomes]
rs11719428	0.82[EUR][1000 genomes]
rs11720894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12629096	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12633004	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12637784	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638786	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12639313	0.85[EUR][1000 genomes]
rs1452208	0.85[EUR][1000 genomes]
rs17235431	0.85[EUR][1000 genomes]
rs17235452	0.82[EUR][1000 genomes]
rs17235466	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17235494	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17634512	0.85[EUR][1000 genomes]
rs17825368	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1869158	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1869159	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34270989	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35721039	0.86[EUR][1000 genomes]
rs41521744	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55853651	0.84[EUR][1000 genomes]
rs58067804	0.83[AFR][1000 genomes]
rs60879071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61092323	0.83[AFR][1000 genomes]
rs61524165	0.83[AFR][1000 genomes]
rs6763223	0.85[EUR][1000 genomes]
rs6763275	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774658	0.85[EUR][1000 genomes]
rs6783930	0.81[EUR][1000 genomes]
rs6786714	0.85[EUR][1000 genomes]
rs6794479	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73080547	0.85[EUR][1000 genomes]
rs73080560	0.86[EUR][1000 genomes]
rs73086405	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73086422	0.82[AFR][1000 genomes]
rs73086436	0.81[AFR][1000 genomes]
rs7616016	0.83[EUR][1000 genomes]
rs7640618	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs901151	0.80[EUR][1000 genomes]
rs991335	0.84[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56306000-56319200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56310600-56312200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:56311000-56312200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:56311400-56312200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr3:56311400-56312200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:56311600-56317000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:56311600-56317000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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