Variant report

Variant	rs17235494
Chromosome Location	chr3:56317848-56317849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11707881	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11707901	0.84[EUR][1000 genomes]
rs11719428	0.91[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs11720894	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12629096	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12633004	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12637784	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638786	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12639313	0.84[EUR][1000 genomes]
rs1452208	0.85[EUR][1000 genomes]
rs17235431	0.84[EUR][1000 genomes]
rs17235452	0.81[EUR][1000 genomes]
rs17235466	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17634512	0.84[EUR][1000 genomes]
rs17825368	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869158	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1869159	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34270989	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35721039	0.85[EUR][1000 genomes]
rs41521744	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55853651	0.83[EUR][1000 genomes]
rs58067804	0.83[AFR][1000 genomes]
rs60879071	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60900173	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61092323	0.83[AFR][1000 genomes]
rs61524165	0.83[AFR][1000 genomes]
rs6763223	0.84[EUR][1000 genomes]
rs6763275	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6764950	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs6774658	0.84[EUR][1000 genomes]
rs6783930	0.80[EUR][1000 genomes]
rs6786714	0.84[EUR][1000 genomes]
rs6794479	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73080547	0.84[EUR][1000 genomes]
rs73080560	0.85[EUR][1000 genomes]
rs73086405	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73086422	0.82[AFR][1000 genomes]
rs73086436	0.81[AFR][1000 genomes]
rs7616016	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs7640618	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9311598	0.86[JPT][hapmap]
rs991335	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17235494	DNAH12	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56306000-56319200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56312200-56318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56312200-56319400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:56314400-56319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:56316400-56322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:56316600-56318200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr3:56316600-56318400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr3:56316800-56318200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56316800-56318400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:56316800-56318800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:56317200-56318400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr3:56317400-56319400	Weak transcription	HUVEC	blood vessel

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