Variant report

Variant	rs6764950
Chromosome Location	chr3:56215474-56215475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56213902..56216119-chr3:56218324..56219977,2	K562	blood:

Variant related genes	Relation type
ENSG00000200238	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11707901	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11712770	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11716452	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11716632	0.83[EUR][1000 genomes]
rs11719428	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636541	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12639313	0.87[EUR][1000 genomes]
rs13065094	0.84[ASN][1000 genomes]
rs1352013	0.85[EUR][1000 genomes]
rs1352014	0.86[EUR][1000 genomes]
rs1452208	0.86[EUR][1000 genomes]
rs1452216	0.83[EUR][1000 genomes]
rs1485679	0.80[EUR][1000 genomes]
rs17235431	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17634512	0.87[EUR][1000 genomes]
rs2316861	0.80[EUR][1000 genomes]
rs28823346	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35721039	0.86[EUR][1000 genomes]
rs4974185	0.80[EUR][1000 genomes]
rs4974186	0.81[EUR][1000 genomes]
rs55853651	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6445777	0.81[EUR][1000 genomes]
rs6763223	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6774658	0.87[EUR][1000 genomes]
rs6786714	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73080547	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73080560	0.86[EUR][1000 genomes]
rs7616016	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7636668	0.84[ASN][1000 genomes]
rs7653658	0.80[ASN][1000 genomes]
rs9311598	0.91[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9311599	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs991335	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56211800-56222400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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