Variant report

Variant	rs11712770
Chromosome Location	chr3:56259172-56259173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11707901	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11716452	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11719428	0.83[EUR][1000 genomes]
rs12636541	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12639313	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13065094	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1352013	0.80[EUR][1000 genomes]
rs1352014	0.80[EUR][1000 genomes]
rs1452208	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1485679	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17235431	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17235452	0.80[AMR][1000 genomes]
rs17634512	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2316861	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28823346	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35721039	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4974185	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974186	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55853651	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55928895	0.80[EUR][1000 genomes]
rs6445777	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6763223	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6764950	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6774658	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6786714	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73080547	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73080560	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7616016	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7636668	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7653658	0.86[ASN][1000 genomes]
rs7653768	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9311598	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9311599	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs991335	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:56259000-56260000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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