Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11712770	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12488385	0.81[EUR][1000 genomes]
rs12490423	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13065094	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1352013	0.84[EUR][1000 genomes]
rs1352014	0.85[EUR][1000 genomes]
rs1452209	0.81[EUR][1000 genomes]
rs1452210	0.80[EUR][1000 genomes]
rs1485679	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17235452	0.81[AMR][1000 genomes]
rs1947347	0.82[AMR][1000 genomes]
rs2316861	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4974185	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4974186	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6445777	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7636668	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7649615	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7653658	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9311599	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9880047	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: