Variant report

Variant	rs6445777
Chromosome Location	chr3:56264729-56264730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10433552	0.82[EUR][1000 genomes]
rs10433620	0.82[EUR][1000 genomes]
rs11130503	0.82[EUR][1000 genomes]
rs11709589	0.83[EUR][1000 genomes]
rs11712770	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11716452	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488385	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12490423	0.87[EUR][1000 genomes]
rs12636541	0.81[EUR][1000 genomes]
rs13061788	0.83[EUR][1000 genomes]
rs13065094	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13070314	0.83[EUR][1000 genomes]
rs13084765	0.81[EUR][1000 genomes]
rs13087905	0.82[EUR][1000 genomes]
rs13096822	0.82[EUR][1000 genomes]
rs13097694	0.82[EUR][1000 genomes]
rs1352013	0.93[EUR][1000 genomes]
rs1352014	0.94[EUR][1000 genomes]
rs1452209	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452210	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1485677	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1485678	0.82[EUR][1000 genomes]
rs1485679	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1901553	0.83[EUR][1000 genomes]
rs1947347	0.88[EUR][1000 genomes]
rs1994294	0.82[EUR][1000 genomes]
rs2316484	0.82[EUR][1000 genomes]
rs2316861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823346	0.81[EUR][1000 genomes]
rs34235403	0.83[EUR][1000 genomes]
rs35138614	0.82[EUR][1000 genomes]
rs4318528	0.82[EUR][1000 genomes]
rs4974119	0.81[EUR][1000 genomes]
rs4974181	0.82[EUR][1000 genomes]
rs4974184	0.83[EUR][1000 genomes]
rs4974185	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974186	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55853651	0.81[ASN][1000 genomes]
rs6445773	0.83[EUR][1000 genomes]
rs6445774	0.83[EUR][1000 genomes]
rs6445775	0.81[EUR][1000 genomes]
rs6764950	0.81[EUR][1000 genomes]
rs6782312	0.88[EUR][1000 genomes]
rs6805098	0.82[EUR][1000 genomes]
rs7628015	0.82[EUR][1000 genomes]
rs7636668	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7649615	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7653658	0.89[EUR][1000 genomes]
rs7653768	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9311598	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9311599	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs982477	0.82[EUR][1000 genomes]
rs9880047	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs991335	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell

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