Variant report
| Variant | rs28823346 |
|---|---|
| Chromosome Location | chr3:56195363-56195364 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11707901 | 0.88[EUR][1000 genomes] |
| rs11712770 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11716452 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11716632 | 0.83[EUR][1000 genomes] |
| rs11719428 | 0.90[EUR][1000 genomes] |
| rs12636541 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12639313 | 0.88[EUR][1000 genomes] |
| rs1352013 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1352014 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1452208 | 0.86[EUR][1000 genomes] |
| rs1452216 | 0.82[EUR][1000 genomes] |
| rs1485679 | 0.80[EUR][1000 genomes] |
| rs17235431 | 0.88[EUR][1000 genomes] |
| rs17634512 | 0.88[EUR][1000 genomes] |
| rs2316861 | 0.81[EUR][1000 genomes] |
| rs35721039 | 0.87[EUR][1000 genomes] |
| rs4974185 | 0.80[EUR][1000 genomes] |
| rs4974186 | 0.81[EUR][1000 genomes] |
| rs55853651 | 0.85[EUR][1000 genomes] |
| rs6445777 | 0.81[EUR][1000 genomes] |
| rs6763223 | 0.88[EUR][1000 genomes] |
| rs6764950 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6774658 | 0.88[EUR][1000 genomes] |
| rs6786714 | 0.88[EUR][1000 genomes] |
| rs73080547 | 0.86[EUR][1000 genomes] |
| rs73080560 | 0.87[EUR][1000 genomes] |
| rs7616016 | 0.88[EUR][1000 genomes] |
| rs9311598 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9311599 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs991335 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009709 | chr3:56000827-56294945 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:56192400-56204200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
