Variant report

Variant	rs9311599
Chromosome Location	chr3:56256627-56256628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11707901	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11712770	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716452	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719428	0.87[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs12488385	0.80[ASN][1000 genomes]
rs12490423	0.86[ASN][1000 genomes]
rs12636541	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12639313	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13065094	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1352013	0.81[EUR][1000 genomes]
rs1352014	0.82[EUR][1000 genomes]
rs1452208	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1452209	0.85[ASN][1000 genomes]
rs1452210	0.85[ASN][1000 genomes]
rs1485677	0.84[ASN][1000 genomes]
rs1485679	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17235431	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235452	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17634512	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1947347	0.85[ASN][1000 genomes]
rs2316861	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28823346	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35721039	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4974185	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974186	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55853651	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55928895	0.82[EUR][1000 genomes]
rs6445777	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763223	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6764950	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6774658	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6782312	0.83[ASN][1000 genomes]
rs6786714	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73080547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73080560	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7616016	0.91[CEU][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7636668	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7649615	0.84[ASN][1000 genomes]
rs7653658	0.93[ASN][1000 genomes]
rs7653768	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9311598	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9880047	0.80[ASN][1000 genomes]
rs991334	0.82[EUR][1000 genomes]
rs991335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9311599	ACTR8	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56254800-56257000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:56254800-56257000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:56254800-56258200	Weak transcription	Brain Angular Gyrus	brain
5	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:56255000-56257000	Weak transcription	Brain Substantia Nigra	brain
7	chr3:56256400-56257600	Enhancers	Brain Hippocampus Middle	brain
8	chr3:56256400-56258200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:56256600-56257200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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