Variant report

Variant	rs55928895
Chromosome Location	chr3:56252990-56252991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11707901	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11712770	0.80[EUR][1000 genomes]
rs11719428	0.87[EUR][1000 genomes]
rs12490423	0.80[AMR][1000 genomes]
rs12633004	0.80[EUR][1000 genomes]
rs12639313	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1452208	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17235431	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17235452	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17235466	0.81[EUR][1000 genomes]
rs17634512	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35721039	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55853651	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763223	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6774658	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6786714	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6794479	0.81[EUR][1000 genomes]
rs73080547	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73080560	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7616016	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9311599	0.82[EUR][1000 genomes]
rs991335	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56248000-56254400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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