Variant report

Variant	rs6763223
Chromosome Location	chr3:56240424-56240425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11707881	0.85[EUR][1000 genomes]
rs11707901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11712770	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11716452	0.88[EUR][1000 genomes]
rs11719428	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11720894	0.85[EUR][1000 genomes]
rs12488385	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12490423	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629096	0.84[EUR][1000 genomes]
rs12633004	0.87[EUR][1000 genomes]
rs12636541	0.88[EUR][1000 genomes]
rs12637784	0.83[EUR][1000 genomes]
rs12638786	0.84[EUR][1000 genomes]
rs12639313	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13065094	0.80[ASN][1000 genomes]
rs1452208	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1452209	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1452210	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1485677	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17235431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17235452	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17235466	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235494	0.84[EUR][1000 genomes]
rs17634512	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17825368	0.86[EUR][1000 genomes]
rs1869158	0.84[EUR][1000 genomes]
rs1869159	0.84[EUR][1000 genomes]
rs1947347	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28823346	0.88[EUR][1000 genomes]
rs34270989	0.82[EUR][1000 genomes]
rs35721039	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41521744	0.84[EUR][1000 genomes]
rs55853651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55928895	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60879071	0.85[EUR][1000 genomes]
rs60900173	0.85[EUR][1000 genomes]
rs6763275	0.85[EUR][1000 genomes]
rs6764950	0.92[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6774658	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6782312	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786714	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6794479	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73080547	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73080560	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73086405	0.86[EUR][1000 genomes]
rs7616016	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7636668	0.80[ASN][1000 genomes]
rs7640618	0.85[EUR][1000 genomes]
rs7649615	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9311598	0.83[CEU][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9311599	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9880047	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs991335	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56240200-56240600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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