Variant report

Variant	rs7640618
Chromosome Location	chr3:56305410-56305411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11130505	0.81[EUR][1000 genomes]
rs11707881	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11707901	0.85[EUR][1000 genomes]
rs11718962	0.81[EUR][1000 genomes]
rs11719428	0.91[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs11720894	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12629096	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12630006	0.80[EUR][1000 genomes]
rs12633004	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12637784	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638786	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12639313	0.85[EUR][1000 genomes]
rs13081402	0.81[EUR][1000 genomes]
rs13081691	0.81[EUR][1000 genomes]
rs1452208	0.86[EUR][1000 genomes]
rs17235431	0.85[EUR][1000 genomes]
rs17235452	0.82[EUR][1000 genomes]
rs17235466	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17235494	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17634512	0.85[EUR][1000 genomes]
rs17825368	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869158	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869159	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123178	0.81[EUR][1000 genomes]
rs34270989	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34484508	0.81[EUR][1000 genomes]
rs35721039	0.86[EUR][1000 genomes]
rs41521744	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974188	0.80[EUR][1000 genomes]
rs55853651	0.84[EUR][1000 genomes]
rs60879071	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900173	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763223	0.85[EUR][1000 genomes]
rs6763275	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6764950	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs6774658	0.85[EUR][1000 genomes]
rs6783930	0.82[EUR][1000 genomes]
rs6786714	0.85[EUR][1000 genomes]
rs6794479	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73080547	0.85[EUR][1000 genomes]
rs73080560	0.86[EUR][1000 genomes]
rs73086405	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7616016	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs901151	0.81[EUR][1000 genomes]
rs9311598	0.86[JPT][hapmap];0.80[TSI][hapmap]
rs991335	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7640618	DNAH12	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:56304600-56307400	Weak transcription	Ovary	ovary
3	chr3:56304600-56309400	Weak transcription	Fetal Muscle Leg	muscle

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