Variant report

Variant	rs73083346
Chromosome Location	chr1:211889322-211889323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211877596..211879962-chr1:211887940..211890928,3	K562	blood:
2	chr1:211887870..211890742-chr1:211896831..211898896,2	MCF-7	breast:
3	chr1:211878150..211879962-chr1:211887940..211889499,2	K562	blood:
4	chr1:211889254..211891385-chr1:211896784..211898680,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPGAT1-1	chr1:211889270-211889342	ENSG00000226868

Variant related genes	Relation type
ENSG00000226868	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11119798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11119800	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12145195	1.00[ASN][1000 genomes]
rs17018046	1.00[ASN][1000 genomes]
rs17018202	1.00[ASN][1000 genomes]
rs56230302	1.00[ASN][1000 genomes]
rs58505301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59615358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828513	1.00[ASN][1000 genomes]
rs61828514	1.00[ASN][1000 genomes]
rs73075387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7512874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7536368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7543710	1.00[ASN][1000 genomes]
rs7545954	1.00[ASN][1000 genomes]
rs7547667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7547876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7550089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211884800-211889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:211888800-211889600	Enhancers	Adipose Nuclei	Adipose
4	chr1:211889000-211889600	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:211889000-211889800	Enhancers	Fetal Muscle Leg	muscle
6	chr1:211889000-211889800	Enhancers	Left Ventricle	heart
7	chr1:211889200-211889400	Enhancers	Primary hematopoietic stem cells	blood
8	chr1:211889200-211889600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:211889200-211889600	Enhancers	Fetal Stomach	stomach
10	chr1:211889200-211889800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:211889200-211889800	Enhancers	Sigmoid Colon	Sigmoid Colon

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