Variant report

Variant	rs7550089
Chromosome Location	chr1:211888364-211888365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211877596..211879962-chr1:211887940..211890928,3	K562	blood:
2	chr1:211887870..211890742-chr1:211896831..211898896,2	MCF-7	breast:
3	chr1:211878150..211879962-chr1:211887940..211889499,2	K562	blood:

Variant related genes	Relation type
ENSG00000226868	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11119798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11119800	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12145195	1.00[ASN][1000 genomes]
rs17018046	1.00[ASN][1000 genomes]
rs17018202	1.00[ASN][1000 genomes]
rs1867376	1.00[CHB][hapmap]
rs56230302	1.00[ASN][1000 genomes]
rs58505301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59615358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828513	1.00[ASN][1000 genomes]
rs61828514	1.00[ASN][1000 genomes]
rs6684175	1.00[CHB][hapmap]
rs726986	1.00[CHB][hapmap]
rs73075387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7512874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536267	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7536368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7543710	1.00[ASN][1000 genomes]
rs7545954	1.00[ASN][1000 genomes]
rs7547667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7547876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9429875	1.00[CHB][hapmap]
rs9430074	1.00[CHB][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211884800-211889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:211885400-211889200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:211887800-211889000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:211888200-211888800	Weak transcription	Adipose Nuclei	Adipose

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