The 2.0 version of rSNPBase

Variant report

Variant rs17018202
Chromosome Location chr1:212094329-212094330
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212084800-212113000 Weak transcription Brain Anterior Caudate brain
2 chr1:212085400-212101800 Weak transcription Colonic Mucosa Colon
3 chr1:212088000-212099200 Enhancers Fetal Intestine Large intestine
4 chr1:212088600-212099200 Enhancers Fetal Intestine Small intestine
5 chr1:212090200-212094600 Enhancers Hela-S3 cervix
6 chr1:212090400-212094600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr1:212090600-212094400 Enhancers Osteobl bone
8 chr1:212090600-212094600 Enhancers Duodenum Mucosa Duodenum
9 chr1:212090600-212094800 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr1:212090800-212094400 Enhancers Muscle Satellite Cultured Cells --
11 chr1:212090800-212094400 Enhancers Pancreas Pancrea
12 chr1:212090800-212094400 Enhancers Stomach Mucosa stomach
13 chr1:212090800-212094400 Enhancers NHLF lung
14 chr1:212090800-212094600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:212090800-212095400 Enhancers Adipose Nuclei Adipose
16 chr1:212091000-212094600 Enhancers NHDF-Ad bronchial
17 chr1:212091000-212102200 Weak transcription Esophagus oesophagus
18 chr1:212092000-212096400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:212092000-212096600 Weak transcription HMEC breast
20 chr1:212092600-212094400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:212093000-212098400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:212093400-212094400 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr1:212093400-212094400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:212093400-212094400 Enhancers Cortex derived primary cultured neurospheres brain
25 chr1:212093400-212094400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:212093400-212094400 Enhancers Brain Hippocampus Middle brain
27 chr1:212093400-212094400 Enhancers Fetal Muscle Leg muscle
28 chr1:212093400-212094400 Enhancers Ovary ovary
29 chr1:212093400-212094400 Flanking Active TSS A549 lung
30 chr1:212093400-212094600 Enhancers Fetal Muscle Trunk muscle
31 chr1:212093600-212095400 Enhancers Liver Liver
32 chr1:212093800-212094400 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:212093800-212098200 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:212093800-212101800 Weak transcription Gastric stomach
35 chr1:212094000-212095400 Enhancers Right Atrium heart
36 chr1:212094200-212094400 Enhancers Rectal Mucosa Donor 29 rectum
37 chr1:212094200-212094400 Enhancers Sigmoid Colon Sigmoid Colon
38 chr1:212094200-212094600 Flanking Active TSS HepG2 liver
39 chr1:212094200-212103200 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015