Variant report
| Variant | rs7545954 |
|---|---|
| Chromosome Location | chr1:211892267-211892268 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:211877072..211879946-chr1:211891385..211892885,2 | K562 | blood: | |
| 2 | chr1:211890956..211893097-chr1:211894407..211896012,2 | K562 | blood: | |
| 3 | chr1:211891341..211893035-chr1:211906287..211908426,2 | K562 | blood: | |
| 4 | chr1:211890426..211892456-chr1:211893790..211896012,2 | K562 | blood: | |
| 5 | chr1:211883405..211884989-chr1:211891475..211893240,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11119797 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11119798 | 1.00[ASN][1000 genomes] |
| rs11119800 | 1.00[ASN][1000 genomes] |
| rs12123627 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12130915 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12145195 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12145981 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17018046 | 1.00[ASN][1000 genomes] |
| rs17018202 | 1.00[ASN][1000 genomes] |
| rs56230302 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58505301 | 1.00[ASN][1000 genomes] |
| rs59615358 | 1.00[ASN][1000 genomes] |
| rs61828513 | 1.00[ASN][1000 genomes] |
| rs61828514 | 1.00[ASN][1000 genomes] |
| rs73075387 | 1.00[ASN][1000 genomes] |
| rs73083346 | 1.00[ASN][1000 genomes] |
| rs73083349 | 1.00[ASN][1000 genomes] |
| rs73083354 | 1.00[ASN][1000 genomes] |
| rs73083356 | 1.00[ASN][1000 genomes] |
| rs73083358 | 1.00[ASN][1000 genomes] |
| rs7512315 | 0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7512874 | 1.00[ASN][1000 genomes] |
| rs7525086 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7533875 | 1.00[ASN][1000 genomes] |
| rs7533881 | 1.00[ASN][1000 genomes] |
| rs7536267 | 1.00[ASN][1000 genomes] |
| rs7536353 | 1.00[ASN][1000 genomes] |
| rs7536368 | 1.00[ASN][1000 genomes] |
| rs7543710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7547667 | 1.00[ASN][1000 genomes] |
| rs7547876 | 1.00[ASN][1000 genomes] |
| rs7550089 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:211879200-211913600 | Weak transcription | Right Atrium | heart |
| 2 | chr1:211891000-211892400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
