Variant report

Variant	rs73088663
Chromosome Location	chr12:44713760-44713761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44710214..44712125-chr12:44712657..44715022,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139173	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1316959	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1353148	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55726837	0.81[EUR][1000 genomes]
rs55761438	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55882010	0.84[AMR][1000 genomes]
rs56126066	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56204845	0.94[EUR][1000 genomes]
rs56209461	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56246701	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68098210	0.94[EUR][1000 genomes]
rs73086772	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73086790	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73086798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088671	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088684	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088689	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088699	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088702	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090608	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090670	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090675	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090676	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090679	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090681	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090683	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090698	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73090700	0.94[EUR][1000 genomes]
rs73092503	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092504	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092506	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092508	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092511	0.94[EUR][1000 genomes]
rs73094321	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73094394	0.84[AMR][1000 genomes]
rs73094402	0.84[AMR][1000 genomes]
rs73096308	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv520635	chr12:44707667-44720874	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44699000-44713800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:44699000-44736000	Weak transcription	Pancreas	Pancrea
3	chr12:44699000-44782000	Weak transcription	Aorta	Aorta
4	chr12:44709200-44743200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:44712400-44765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44713000-44714800	Weak transcription	Fetal Intestine Small	intestine

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