Variant report

Variant	rs55726837
Chromosome Location	chr12:44847331-44847332
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10880646	0.89[EUR][1000 genomes]
rs11837624	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1316959	0.86[EUR][1000 genomes]
rs1353148	0.86[EUR][1000 genomes]
rs1493758	1.00[ASN][1000 genomes]
rs17094666	1.00[ASN][1000 genomes]
rs55702001	0.86[EUR][1000 genomes]
rs55761438	0.86[EUR][1000 genomes]
rs55882010	0.89[EUR][1000 genomes]
rs55921214	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56126066	0.86[EUR][1000 genomes]
rs56204845	0.86[EUR][1000 genomes]
rs56209461	0.86[EUR][1000 genomes]
rs56246701	0.94[EUR][1000 genomes]
rs56286815	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68098210	0.86[EUR][1000 genomes]
rs7304503	1.00[ASN][1000 genomes]
rs73086798	0.81[EUR][1000 genomes]
rs73088659	0.81[EUR][1000 genomes]
rs73088660	0.81[EUR][1000 genomes]
rs73088663	0.81[EUR][1000 genomes]
rs73088667	0.81[EUR][1000 genomes]
rs73088671	0.86[EUR][1000 genomes]
rs73088684	0.86[EUR][1000 genomes]
rs73088689	0.86[EUR][1000 genomes]
rs73088699	0.86[EUR][1000 genomes]
rs73088702	0.86[EUR][1000 genomes]
rs73090608	0.86[EUR][1000 genomes]
rs73090670	0.86[EUR][1000 genomes]
rs73090675	0.86[EUR][1000 genomes]
rs73090676	0.86[EUR][1000 genomes]
rs73090679	0.86[EUR][1000 genomes]
rs73090681	0.86[EUR][1000 genomes]
rs73090683	0.86[EUR][1000 genomes]
rs73090698	0.86[EUR][1000 genomes]
rs73090700	0.86[EUR][1000 genomes]
rs73092503	0.86[EUR][1000 genomes]
rs73092504	0.86[EUR][1000 genomes]
rs73092506	0.86[EUR][1000 genomes]
rs73092508	0.86[EUR][1000 genomes]
rs73092511	0.86[EUR][1000 genomes]
rs7309287	1.00[ASN][1000 genomes]
rs73094321	0.89[EUR][1000 genomes]
rs73094394	0.89[EUR][1000 genomes]
rs73094402	0.89[EUR][1000 genomes]
rs73096308	0.89[EUR][1000 genomes]
rs73096318	0.89[EUR][1000 genomes]
rs73096329	0.86[EUR][1000 genomes]
rs73276296	1.00[ASN][1000 genomes]
rs73276299	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44840600-44848200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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